miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|198050359|gb|FL775450.1|FL775450 CAGATAATTAAGATTCACGTCGACCATGTTAACCACTAGCATCACGTAAGAACGATGAAGTTTCAACAACAGGCAGGAAC
TTTGGCAAGCAGTTTCTGAAGCGGCATACCGCTGCTCTGCATCAGATAAGTACTCCAGTAGGAATTTTAAACTAGGCGAA
AATTAAATTCCGAGTCCCCACAACTCTAGTATGGTCTCTAACATGGATAAACTGCTAAGATAGTTGGTTCAACTGATGCA
TAGCATGGATAGATCCTTCGTTTCACTTGCTCTTTGATGTTGCTTCATTCCCGCTTGGCTGCCAACTTTTTCTTCTTCCT
CAGCTCGTTGGTGTGTCCGCACTTCTTCTTGCGGCAGTTCTCGGCCCTGCTGGAGTTGCGGGCGTAGCACTTGCGGCAGA
TCATCTTGTGCTGGCGGTACTTGAGCGCGAGCTGGAGGAGGTTGAGGTCGATAATGGGGTAGGTGCCGCCCTTGCCGCCG
CCCCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCTCGTCCTCCAGCTG
CTTCCCGGCGAAGATGAGCCGCTGCTGCTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGGCGACGG
TGTCGCTGCTGTCGACCTCCAGCGTCACCGTCTTCCCGTGGAGGGTCTTCACGAAGATCTGCATCTCGCCTGAGCTCGGG
GATTTCTCGCCGA




Most similar to sp|Q42202|RL40B_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q42202|RL40B_ARATH Ubiquitin-60S ribosomal protein L40-2
           OS=Arabidopsis thaliana GN=RPL40B PE=1 SV=2
          Length = 128

 Score =  187 bits (476), Expect = 5e-47
 Identities = 97/126 (76%), Positives = 105/126 (83%)
 Frame = -3

Query: 704 MQIFVKTLHGKTVTLEVDSSDTVANVKAKIQDKEGIPPEQQRLIFAGKQLEDERTLADYN 525
           MQIFVKTL GKT+TLEV+SSDT+ NVKAKIQDKEGIPP+QQRLIFAGKQLED RTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 524 IQKESTLHLVLRLRXXXXXGTYPIIDLNLLQLALKYRQHKMICRKCYARNSSRAENCRKK 345
           IQKESTLHLVLRLR         II+ +L+ LA KY Q KMICRKCYAR   RA NCRKK
Sbjct: 61  IQKESTLHLVLRLRGG-------IIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKK 113

Query: 344 KCGHTN 327
           KCGH+N
Sbjct: 114 KCGHSN 119